mackaay

MBpanel

The scripts for scientific paper titled “Integrative analysis of gene expression and DNA methylation based on the previously existing one-class logistic regression machine learning approach identifies stemness features in medulloblastoma”

PCa_m6A

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

bisulfite_cfDNA

Code presented in "as is" condition that analyzes data and generates figures found in Cheng et al, PNAS

cfDNAme

chenkaima.github.io

ChiPSeq

Clinker

Gene Fusion Visualiser

cruk-summer-school-2018

Summer school course materials collection

datahub

A centralized location for storing curated data ready for inclusion in cBioPortal.

DNAmethylation

gatk4-genome-processing-pipeline

Workflows used for processing whole genome sequence data + germline variant calling.

gatk4-somatic-cnvs

This repo is archived, these workflows will be housed in the GATK repository under the scripts directory. These workflows are also organized in Dockstore in the GATK Best Practices Workflows collection.

GBMvsNormal

ggsashimi

Command-line tool for the visualization of splicing events across multiple samples

IDH

infercnv

Inferring CNV from Single-Cell RNA-Seq

MINTIE

Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.

MPscore

a score to predict / cluster meningioma progression

phy_clo_dy

Phylogenetic inference from whole genome sequencing data and modeling of clonal dynamics

ProteinEstimation

Python-100-Days

Python - 100天从新手到大师

Rnewfolder

Rtesting

Rtesting

SCS_CAF

StableVsRecurrence

TCGAsubtypemiR

tumorEvolution

WholeDataVis

WSHPackage

R package for the calculation of the following Within-Sample Heterogeneity Scores in Bisulfite Sequencing Data: FDRP, qFDRP, PDR, Epipolymorphism, Methylation Entropy and MHL