maarzt

example-imagej-display

A simple example how to make a class displayable in ImageJ

imagej-roi-course

mastodon

Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.

pr-formatter

Allows to rewrite a pull request such that the commits follow a defined code style

bigdataviewer-core

ImgLib2-based viewer for registered SPIM stacks and more

clij-clearcl

Multi-backend Java Object Oriented Facade API for OpenCL.

clij2

Incubator for CLIJ2 (experimental)

clijx

graphics-net-transfers

...ment for cell tracking data transfers

imagej-ops

ImageJ Ops: "Write once, run anywhere" image processing

imagej-scijava-course

imagej.github.io

GitHub Pages for ImageJ

imglib2

A generic next-generation Java library for image processing

imglib2-algorithm

Image processing algorithms for ImgLib2

imglib2-ij

Translation between ImgLib & ImageJ data structures (both 1.x and 2)

imglib2-labkit-cluster

Labkit on the Cluster (Experimental)

knip-trainable-segmentation

label-utilities-spark

mastodon-collection

mastodon-tomancak

paintera

pom-scijava

Friendly base POM for all SciJava-based software

sandbox

Sandbox for pom-scijava based java code

scijava-common

A plugin framework and application container with built-in extensibility mechanism

scijava-optional

Helpers for emulating named and default arguments

scijava-parallel

A project aiming to utilize parallelization within SciJava

scijava-parallel-examples

Examples for SciJava Parallization Service

scijava-ui-swing

SciJava UI components for Java Swing.

spimdata

representation of multi-angle, multi-channel (etc.) SPIM images and their registration

Trainable_Segmentation

Fiji library to perform image segmentation based on the Weka learning schemes