m6121 / Semantic-Modelling-CA-Imaging

This repository contains the semantic model of an Electronic Lab Notebook (ELN) protocols of a Calcium Imaging study.

Semantic Modelling of Calcium Imaging Electronic Lab Protocols

This repository contains the Electronic Lab Notebook (ELN) protocols and models of the Calcium Imaging study described in the following publication:

Susanne Staehlke, Henrike Rebl, Birgit Finke, Petra Mueller, Martina Gruening, and J. Barbara Nebe. “Enhanced calcium ion mobilization in osteoblasts on amino group containing plasma polymer nanolayer.” Cell & Bioscience, 8(1), March 2018. doi: 10.1186/s13578-018-0220-8

License

This work is licensed under a Creative Commons Attribution 4.0 International License.

In order to reference the GitHub repository, please attribute this as:

Max Schröder, Susanne Staehlke, Barbara Nebe, and Frank Krüger. “Semantic Modelling of Calcium Imaging Electronic Lab Protocols,” https://github.com/m6121/Semantic-Modelling-CA-Imaging

Structure of the Repository

The repository contains two subfolders with two excerpts of the overall model:

1. Data-Recording contains the details of the recording activity resulting in the image files.
2. MG-63 is the model of MG-63 database item that was supplied from the ATCC.

Each of these folders contains a screenshot from the corresponding Electronic Lab Notebook resource as well as a PDF illustration of the model and the semantic model itself in form of an owl file.

The overall model of the ELN protocol is contained in the file CA-Imaging.owl.