Mohamed Mahgoub's starred repositories
quarto-cli
Open-source scientific and technical publishing system built on Pandoc.
makeyourownneuralnetwork
Code for the Make Your Own Neural Network book
awesome-quarto
A curated list of Quarto talks, tools, examples & articles! Contributions welcome!
sqlite-utils
Python CLI utility and library for manipulating SQLite databases
python-mammoth
Convert Word documents (.docx files) to HTML
flask-on-docker
Flask + Docker
rust-htslib
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
Histopathology-Datasets
Ressources of histopathology datasets
XAI-for-bioinformatics
Explainable AI for Bioinformatics
TileDB-VCF
Efficient variant-call data storage and retrieval library using the TileDB storage library.
fibertools-rs
Tools for fiberseq data written in rust.
nf-core-wgsnano
Nextflow pipeline for analysis of Nanopore Whole Genome Sequencing
nf-core-hic
Pipeline for Hi-C data analysis
nf-core-chipseqcr
Nextflow pipeline for ChIP-seq and CUT&RUN analysis based on an nf-core template