Mohamed Mahgoub's repositories
nf-core-chipseqcr
Nextflow pipeline for ChIP-seq and CUT&RUN analysis based on an nf-core template
bam2fastq
Nextflow pipeline to convert BAM/CRAM files to FASTQ files
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nf-core-hic
Pipeline for Hi-C data analysis
Language:NextflowMIT000
nf-core-ttmap
Tool to re-map bam input files to T2T genome
Language:HTMLMIT000
nextflow-nanopore
Nextflow pipeline for analysis of Nanopore Whole Genome Sequencing
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nf-core-vcfintersect
Pipeline to intersect VCF files with different genomic features
Language:NextflowMIT000
nf-core-wgsnano
Nextflow pipeline for analysis of Nanopore Whole Genome Sequencing
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rnasplice
rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
Language:NextflowMIT000
sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Language:NextflowMIT000
test-datasets
Test Datasets