Mojtaba Jahani's repositories
genome_scaffolding
Different tools for HiC scaffolding (SALSA, 3D_DNA, ...)
haplotype_aware_scaffolding
A series of custom scripts for haplotype aware manual curation of Cannabis genome assemblies
BAM2CCS
Efficient Conversion of BAM HiFi Files to CCS Format and Generation of Quality Plots on ComputeCanada
LINKAGE_DRAG
Assessing the Impact of Introgressions on Phenotypic Variation
Genome_assembly
Pipeline for Genome Assembly using HiFi and HiC Technologies and Evaluating the Quality of Assembled Genomes
repeated_association
test for evidence of significant genome-wide repeatability between species
small_analysis
Variety of tools for small bioinformatics analysis
convergence
Identification of top candidate windows and testing window_by_window signatures of convergence (null-W test) with considering recombination effect.
GenomicPrediction
rrBLUP genomic prediction and K fold cross-validation
divseek-canada.github.io
This repository provides the Jekyll framework behind the DivSeek Canada Information website.
divseek-canada-portal
:whale::bar_chart::books: Galaxy + Apollo + Chado + Tripal + JBrowse + JBrowse REST API + PostGraphQL + JBrowse GraphQL Experiment all as a docker-compose.yml