lzlgboy's repositories
HiC_tools
A collection of tools for Hi-C data analysis
CRISPResso2
Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
jupyter-themes
Custom Jupyter Notebook Themes
jupytext
Jupyter notebooks as Markdown documents, Julia, Python or R scripts
kallisto
Near-optimal RNA-Seq quantification
r2d3
R Interface to D3 Visualizations
repr
String and byte representations for all kinds of R objects
ggpointdensity
:chart_with_upwards_trend: :bar_chart: Introduces geom_pointdensity(): A Cross Between a Scatter Plot and a 2D Density Plot.
deep-learning-with-python-notebooks
Jupyter notebooks for the code samples of the book "Deep Learning with Python"
dsb2018_topcoders
DSB2018 [ods.ai] topcoders
build-your-own-mint
Build your own personal finance analytics using Plaid, Google Sheets and CircleCI.
htmlwidgets
HTML Widgets for R
PrediXcan
PrediXcan Project
DeepHF
Core code for the DeepHF prediction tool
mintable
🍃 Roll your own ad-free Mint clone for managing personal finances using publicly available APIs.
ComplexHeatmap
Make Complex Heatmaps
selene
a framework for training sequence-level deep learning networks
papermill
📚 Parameterize, execute, and analyze notebooks
gtex-viz
GTEx Visualizations
chip-seq-pipeline2
ENCODE ChIP-seq pipeline
BAMscale
BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.
ukbrest
ukbREST: efficient and streamlined data access for reproducible research of large biobanks
tmux
tmux source code
online-cv
A minimal Jekyll Theme to host your resume (CV)
tmuxinator
Manage complex tmux sessions easily
seqminer
Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
Intro-to-ChIPseq
Intro to ChIPseq using HPC
rGREAT
Client for GREAT Analysis