lzhengchun / TomoTx

Transformer is All You Need for Computed Tomography

TomoTx

Transformer for the analysis of Sinogram for Computed Tomography.

This repo hosts code for the paper, Masked Sinogram Model with Transformer for ill-Posed Computed Tomography Reconstruction: a Preliminary Study, in prepration. It is not progressing fast because of short of hands, if one really wants to see the draft, it's here.

• dataset folder has the code and instruction to generate the synthesized used in the code/paper.
• SinoTx (i.e., the Masked Sinogram Model) and each application folder has a config folder that contains yaml configuration files for different experiment scenarios.
• One is expected to only modify the configuration file in most reproduce/evaluation cases. The default yaml files come from my own experiment setup, at least filenames to datasets need adjustment to run in your environment.

Citation

If you find my code useful for your research, consider cite:

@misc{https://doi.org/10.48550/arxiv.2209.01356,
  doi = {10.48550/ARXIV.2209.01356},
  url = {https://arxiv.org/abs/2209.01356},
  author = {Liu, Zhengchun and Kettimuthu, Rajkumar and Foster, Ian},
  title = {Masked Sinogram Model with Transformer for ill-Posed Computed Tomography Reconstruction: a Preliminary Study},
  publisher = {arXiv},
  year = {2022},
  copyright = {arXiv.org perpetual, non-exclusive license}
}