lybird300's starred repositories
EpiMitClocks
Epigenetic Mitotic Clocks
PMD_Paper_Scripts
A repository containing code, data, and resource links for the publication "Characterization of universal features of partially methylated domains across tissues and species"
EnrichedHeatmap
make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
vanSchaik_2022_LADborders
Repository to accompany van Schaik et al., 2022.
enrichment_analysis
A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
oncoEnrichR
Explore the cancer relevance of your gene list
MammalianMethylationConsortium
DNA methylation studies of mammalian species
cptac_methylation
Methylation array analysis pipeline for CPTAC
mouse-atac
Repo for website and other code for mouse sci-ATAC-seq project
mouse_brain_2020
Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"
full_stack_ChromHMM_annotations
Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes
molecular-cfDNA-fragmentomics
An et al. Nature Communications 2023
EPIMAP_ANALYSIS
Epimap processing and analysis code repository
OpenPBTA-analysis
The analysis repository for the Open Pediatric Brain Tumor Atlas Project
missMethyl
Bioconductor package for analysis of methylation data from Illumina's Infinium HumanMethylation arrays.