lybird300's repositories
2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF
2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
calculate_mutational_burden
A lightweight python script to calculate mutational burden.
cancer-genomics-workflow
MGI's CWL Cancer Pipelines.
chimeraviz
chimeraviz is an R package that automates the creation of chimeric RNA visualizations.
CLCA_WGS
Deep whole-genome analysis of 494 hepatocellular carcinomas
CMG
Pipeline development for NGS analysis
CPTAC3-RNA-related-pipeline
Gene/transcript expression; Fusion; de novo assembly
CPTAC3.catalog
Details about CPTAC3 data at GDC and in Ding Lab
gencode_regions
Extract 3'UTR, 5'UTR, CDS, Promoter, Genes from Gencode files
getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics
immunology-informatics
Immunology Informatics - Big Data Analysis in Immunology - Tutorials
learning_bam_file
Learning the Sequence Alignment/Map format
MMR
C. elegans and ICGC cancer data analysis for (Meier, Volkova et al. 2017)[https://www.biorxiv.org/content/biorxiv/early/2017/06/13/149153.full.pdf].
mutation-signatures
Create mutation signatures from MAF's, and decompose them into Stratton signatures
RNASeq2017
Course on Best Practices on RNA-Seq data analysis at the University of Salerno - 27-29 September 2017
rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
scell_lung_adenocarcinoma
This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset
SomaticAmplicon
NGS pipeline for somatic variant calling from amplicon datasets
TranscriptomeTools
collection of transcriptome analysis software