Ximi's repositories
dissertation
write up my dissertation project draft
synthetic_perceptron_2020
algorithm code
glib
GLib
NEURON_files
NEURON model files for PLoSCB 2017 manuscript
Probabilistic-Programming-and-Bayesian-Methods-for-Hackers
aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)
smoldyn-cplx
customized Smoldyn allowing reactions and diffusion on complex macromolecules
annotated-transformer
An annotated implementation of the Transformer paper.
bioinformatics
coursera_bioinformatics
Ca-CaM-CaMKII_network
configuration files for the 2017 manuscript
ca_cam_fm
using Faas & Mody (2012) ca-cam binding rxns
data-science-ipython-notebooks
Continually updated data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe), scikit-learn, Kaggle, Spark, Hadoop MapReduce, HDFS, matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines. https://bit.ly/data-notes
deepmind-research
This repository contains implementations and illustrative code to accompany DeepMind publications
dgparse
Desktop Genetics Public Parser Library
from_axon
CA1 model with probabilistic release synapses
GDAX-Python
The unofficial Python client for the GDAX API
interactive-coding-challenges
April 2017 - Huge Update! Interactive, test-driven Python coding interview challenges (algorithms and data structures). Includes Anki Flashcards.
multistrand
Multistrand nucleic acid kinetic simulator
Prompt-Engineering-Guide
🐙 Guides, papers, lecture, notebooks and resources for prompt engineering
radically_elementary_probability_theory
reading notes
smoldyn-cplx.4
with compartment-dependent diffusion