Lourdes Velo Suarez's repositories
r-scripts
all my dirty r-scripts
GPL-3.0000
dadasnake
Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake
GPL-3.0000
Sars-CoV-2-NGS-pipeline
A simple snakemake pipeline to call variant from NGS data of Sars-CoV-2 genome
Language:PythonMIT000
covid
Pipeline to get to detect covid-19 strains from Miseq reads
Language:Jupyter Notebook000
testing_git
tutorial
Language:Shell000
tutorials
Tutorials on phylogenetic and phylogenomic inference
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UPSET
trying to get the upset server
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bioinformatics-one-liners
Bioinformatics one liners from Ming Tang
MIT000
Quantum-Animation
Some animations made using manim , showing quantum algorithms in action.
NOASSERTION000
ncbi-genome-download
Scripts to download genomes from the NCBI FTP servers
Apache-2.0000
16S-dada2
Snakemake pipeline for amplicon sequencing using dada2
MIT000
sourmash-oddify
Tools and workflows for evaluating bacterial and archaeal genome contamination with sourmash and GTDB.
NOASSERTION000
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oneliners
Useful bash one-liners for bioinformatics.
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