Lourdes Velo Suarez's repositories
2022.1-faes-tutorial
JupyterBook for QIIME 2 FAES January 2022 workshop
Adv360-Pro-ZMK
Production repository for the all-new Advantage360 Professional using ZMK engine
aMeta
Ancient microbiome snakemake workflow
amplicon
Pipeline for pipeline dada2 analisis
An-Introduction-To-Applied-Bioinformatics
Interactive lessons in bioinformatics.
AncientMetagenomeDir
Repository containing lists of all published ancient metagenome samples (and related)
anvio
An analysis and visualization platform for 'omics data
bioinformatics-workflows
minimal example implementations for bioinformatics workflow managers
Causal_Microbiome_Tutorial
Causal inference framework for environment-microbiome data applied to American Gut data.
compPLS
An R package for Partial Least Squares analysis and plotting for (high dimensional) compositional data
dadaist2
🎨 dadaist2 - Highway to R
ganttrify
Create beautiful Gantt charts with ggplot2
ggpicrust2
Make Picrust2 Output Analysis and Visualization Easier
js4ai
Collection of Javascripts for Adobe Illustrator
KrakenTools
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
metagMisc
Miscellaneous functions for metagenomic analysis.
microbiomeMarker
R package for microbiome biomarker discovery
nat_com_answer_letter
Code use to analyse data from PRJNA632856. Batch and R scripts to generate figures.
pandas-ninja
game challenges for python pandas
resistome
A snakemake pipeline to estimate resistome data (using bakta, deeparg and amrfinder) from metagenome assemblies
ScaleSimulation
Examples for "Scale Reliant Inference from Compositional Survey"
Snakemake_amplicon
This is a complete pipeline to analyse MiSeq sequence data from 16S amplicons --> to use @ proton
TreeCluster
Efficient phylogenetic clustering of viral sequences
VilgalysKlunk_yersinia_pestis
Code for Klunk, Vilgalys, et al. (submitted)