luoyuanlab

Clinical-Longformer

text_gcn_tutorial

A tutorial & minimal example (8min on CPU) for Graph Convolutional Networks for Text Classification. AAAI 2019

SOAR

SHINE

NeurIPS 2022 paper, SubHypergraph Inductive Neural nEtwork

autism_precision_medicine

Nature Medicine paper. A Multidimensional Precision Medicine Approach for Autism Subtype Identification.

AI_and_Data_Science_Year_In_Reviews

seg_gcn

Segment graph convolutional neural network for relation classification. Paper in JAMIA.

panther

PANTHER: Pathway Augmented Nonnegative Tensor factorization for HighER-order feature learning. AAAI 2021

3dmice

Missing data imputation for longitudinal multi-variable EHR data. Paper in JAMIA.

seg_cnn

Segment CNN for relation classification. Paper in JAMIA.

mimic_imputation

Generating the imputation dataset for the DACMI 2019 challenge

MLfairHF

rangetree

Implementation of the fastest interval tree querying algorithm based on range tree data structure. Work on genomic and time intervals etc. Paper in Scientific Reports.

lapnlp

LISP Architecture for Portable Natural Language Processing. BIBM 2018.

scanmap

Supervised Confounding Aware NMF for Polygenic Risk Modeling. MLHC 2020.

stdgcn

hnmf

Hybrid NMF to integrate genomic data and phenotype data for better patient subtyping. Paper in Bioinformatics.

gait

HyperGCN

NeurIPS 2019: HyperGCN: A New Method of Training Graph Convolutional Networks on Hypergraphs

mimic4

Exploration code on MIMIC-IV

twitter_vaccine_analysis