luke0321li

cwas

Category-wide association study (CWAS) (Werling et al., 2018; An et al., 2018)

minimap

This repo is DEPRECATED. Please use minimap2, the successor of minimap.

python-bloomfilter

Scalable Bloom Filter implemented in Python

goatools

Python library to handle Gene Ontology (GO) terms

python-genome-browser

Tools for making plots of genomic datasets in a genome-browser-like format

deltaSVM

Codes to run deltaSVM models to predict allelic TF binding

cwas

LECIF

Learning a genome-wide score of conservation at the functional genomics level between human and mouse

harmonypy

🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.

FEAST

Fast expectation maximization for microbial source tracking

HiC_pipeline

Pipeline for processing mouse HiC data in multiple strains

avocado

Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputation of epigenomic experiments that have not yet been performed.

colorpal

A lightweight script to extract a color palette from an image

DARTS

Deep-learning Augmented RNA-seq analysis of Transcript Splicing

SpliceAI

A deep learning-based tool to identify splice variants

cs130

cs130

ForestQC

Quality control on genetic variants from next-generation sequencing data using random forest

Outside-College-Projects-Swift-Firebase

ios applications