lukauskas

dtwco

dtwco: constrained Dynamic Time Warping implementation in python

docker-bokeh

Dockerfile for serving bokeh visualisations

obsidian-highlighter-theme

Makes obsidian notes look like printed text annotated with highlighter.

seimo-rinkimai-2020

Short analysis of Lithuanian Politics for 2020 elections (In Lithuanian)

imagepaste

bernoulli-mixture-model

Implementation of Bernoulli Mixture Models in Python

bokeh-selectize

Selectize.js integration with Bokeh

tmma

MA plots and TMM for python

compbio-notebook

A blend between `scipy-notebook` and `r-notebook` tailored for Computational Biology

dgw

gephi-toolkit-forceatlas2-standalone

Standalone JAR for Forceatlas2 layout from Gephi Toolkit

marcs

Modification Atlas of Regulation by Chromatin States

publications-lukauskas-2024-marcs

Code accompanying the data analyses of our MARCS manuscript.

publications-nakamura-2018-snap-h4k20me2

Source code for the data presented in Nakamura et al. 2018 publication

bokeh-cytoscape-cola

Bokeh integration with cytoscape.js & cola.js

chip-aligning-pipeline

Pipeline for aligning ChIP seq reads from SRA files to reference genome

docker-development-environments

Repository for development environments for my various projects

docker-excelcompare

A lightweight docker image for ExcelCompare https://github.com/na-ka-na/ExcelCompare

ggExtra

Add marginal histograms to ggplot2, and more ggplot2 enhancements

lukauskas

About me

lukauskas.github.io

Contents of lukauskas.co.uk

normpy

Normalization methods for RNA-Seq expression data in Python.

obsidian-releases

palettable2gpl

Palettable color palettes in GPL format to use with Inkscape or Gimp

python-croc

Fork of https://pypi.python.org/pypi/CROC/ with support of py3. Original implementation by S. Joshua Swamidass

python-lopc

Python implementation of LOPC, see https://github.com/Hurricaner1989/LOPC-Matlab-package/

reinke_science_2013_bzip_kd_networks

rodriguez_martinez_elife_2017_motifs

Some further post-processing of data from Rodriguez-Martinez et al. eLife 2017;6:e19272

seaborn

Statistical data visualization using matplotlib

sublime_zk

A SublimeText3 package featuring ID based wiki style links, and #tags, intended for zettelkasten method users. Loaded with tons of features like inline image display, sophisticated tag search, note transclusion features, support for note templates, bibliography support, support for multiple panes, etc. to make working in your Zettelkasten a joy :smile:.