luisgls

SOPRANO

SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions

SSB_selection

Detect natural selection in cancer genomes

dNdSSimulator

dNdS Simulator uses R to simulate a stochastic branching process with a set of genotypes and phenotypes per cell. The main advantage of the model is that simulates immunoediting by introducing immunogenic and escape mutations as well as driver and passenger mutations

PacBioEDA

Python scripts for Exploratory Data Ananlysis of Pacific Biosciences sequence data

cDriver

cDriver R package for finding candidate driver genes in cancers

CORONA

Analysis of the causes of case fatality rate heterogeneity across countries

dNdS_tools

Compilation of scripts/notes for dNdS

MuSiC2

identifying mutational significance in cancer genomes

SISMO

Simulate somatic mutations based on trinucleotide context

Zapata2022_NatGen