Beast code in Giters

ludvigla's repositories

semla

Language:RNOASSERTION56 6 30

STUtility_web_site

Language:R11 2 8

murine_colon_explorer

Language:R6 3 1

healing_intestine_analysis

Language:HTML5 1 3

FFPE_mouse_brain_explorer

Spatial transcriptomics data of coronal sections from mouse brain generated from FFPE and fresh frozen tissue.

Language:R3 1 1

TREXSeg

Segmentation of ImmunoFluroescence image data

Language:HTML3 20

VisiumTrim

TSO and polyA trimming of fastq files generated with 10x Visium

Language:Shell3 10

RRST

Code used for "Spatially resolved transcriptome profiles of degraded and challenging fresh frozen samples "

Language:R2 10

spaceST

Processing and data analysis of Spatial Transcriptomics data.

Language:R2 10

cell_segmentation

Language:HTML100

DiscovAir_data_explorer

Language:R010

EMBO_10xVisium_course

Language:CSS010

FFPE_analysis

Language:HTML010

fullstack_open_2022

Course exercises for fullstack open 2022 given by the University of Helsinki

Language:JavaScript010

fullstack_open_2022_part3

Language:JavaScript010

gtf2table

Converts a GTF file to a table with ENSEMBL ids, gene symbols and gene biotype

Language:R010

hdcaDevHeart

010

jaegten

Language:JavaScript010

liver_cell_segmentation

Segmentation of cells in HE images

Language:R010

Maize_Visium_data_analysis

Analysis and visualization of Maize Visium data

Language:HTML010

osd-st

Data viewer and interactive tool for spatially resolved transcriptomics data based on openseadragon

Language:JavaScript020

simUMI

Language:Jupyter NotebookMIT010

sRIN

Language:R010

ST_UMI_simulation

Simulation of UMIs in the ST method.

Language:Python000

STUtility

Language:R000

test-RCMDcheck

Language:RNOASSERTION010

uu-exercise-Ludvig

uu python course exercises

Language:Jupyter Notebook010

Visium_experiment_prep

Language:Shell010