Beast code in Giters

Lucian Ilie's repositories

DELPHI

Deep learning protein-protein binding sites prediction

Language:Python2000

SPRINT

SPRINT: Scoring PRotein INTeractions

Language:C++GPL-3.013 3 1

SAGE2

De novo genome assembler.

Language:C++GPL-3.01100

ALeS

ALeS: Adaptive-length spaced-seed design

Language:C++GPL-3.0700

E-MEM

E-MEM: efficient computation of maximal exact matches for very large genomes

Language:C++GPL-3.0600

RACER

RACER: Rapid and Accurate Correction of Errors in Reads

Language:C++GPL-3.06 3 2

E-score

Scoring alignments by embedding vector similarity

Language:Jupyter Notebook500

PITHIA

PITHIA: Protein interaction site prediction using multiple sequence alignments and attention

Language:Python3 30

Seq-InSite

Seq-InSite: sequence supersedes structure for protein interaction site prediction

Language:Python200

BOND

Computation of perfect DNA oligonucleotides

Language:C++GPL-3.0100

Canu_HISEA

Modified Canu assembler program with support for HISEA aligner

Language:C++1 2 3

LASER

LASER: Large genome ASsembly EvaluatoR

Language:C++NOASSERTION100

SAGE

String-overlap Assembly of GEnomes

Language:CGPL-3.01 20

SpEED

Fast computation of highly sensitive spaced seeds for effective local similarity detection

Language:C++1 30

Correcting-Illumina-data

Language:CGPL-3.0000

E-MEM-1

Language:C++GPL-3.0000

HISEA

Hierarchical SEed Aligner

Language:C++GPL-3.0000

HiTEC

accurate error correction in high-throughput sequencing data

Language:CGPL-3.0000

QUESS

Language:C++GPL-3.0000

SHRiMP

Accurate mapping of short color-space reads

GPL-3.0020