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luciagrande's starred repositories

Python implementation of de Bruijn graph for genome assembly

Language:Python1300

Demonstration of the UPGMA hierarchal clustering algorithm in Pandas, Seaborn, and Scipy

Language:PythonMIT900

Efficient UPGMA implementation

Language:PythonMIT1000

A basic implementation of the UPGMA (Unweighted Pair Group Method with Arithmetic Mean) clustering algorithm in Python.

Language:Python1100

Scripts in Python to read nucleotide/protein sequences and construct Phylogenetic relationship using UPGMA method

Language:Python200

Implementation of BLAST(Basic Local Alignment Search Tool) algorithm in Python 3.5 using Numpy.

Language:PythonGPL-3.02000

Python implementation of Basic Local Alignment Search Tool (BLAST) , which is the core algorithm in sequence alignment for genomes.

Language:PythonMIT7100