lucaspatel

Lucas Patel's starred repositories

gh-dash

A beautiful CLI dashboard for GitHub 🚀

Language:GoMIT7051 20 172

FriendsDontLetFriends

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

Language:RMIT6331 111 7

lux

Automatically visualize your pandas dataframe via a single print! 📊 💡

Language:PythonApache-2.05147 89 235

obsidian-copilot

THE Copilot in Obsidian

Language:TypeScriptAGPL-3.02732 28 378

adjustText

A small library for automatically adjustment of text position in matplotlib plots to minimize overlaps.

Language:Jupyter NotebookMIT1485 12 153

LLaVA-Med

Large Language-and-Vision Assistant for Biomedicine, built towards multimodal GPT-4 level capabilities.

Language:PythonNOASSERTION1477 28 85

ollama-grid-search

A multi-platform desktop application to evaluate and compare LLM models, written in Rust and React.

Language:TypeScriptMIT455 7 22

1filellm

Specify a github or local repo, github pull request, arXiv or Sci-Hub paper, Youtube transcript or documentation URL on the web and scrape into a text file and clipboard for easier LLM ingestion

Language:PythonMIT441 7 10

bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

Language:PythonGPL-3.0432 13 231

scidataflow

Command line scientific data management tool

Language:RustMIT206 3 17

OSGenome

An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies

Language:PythonGPL-3.0118 7 15

AllTheBacteria

Follow up to Grace Blackwell's 661k dataset, for 2023

Language:PythonMIT76 22 30

catch

A package for designing compact and comprehensive capture probe sets.

Language:PythonMIT74 14 19

sargantana

Language:SystemVerilogNOASSERTION74 50

tabula-sapiens

Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens

Language:Jupyter NotebookBSD-3-Clause38 6 25

rtfm

Research on Tabular Foundation Models

Language:PythonMIT22 5 10

alhazen

AI agents + toolkits for scientific knowledge

Language:Jupyter NotebookMIT20 8 1

random-promoter-dream-challenge-2022

Language:PythonMIT11 20

strainFlye

Pipeline for analyzing (rare) mutations in metagenome-assembled genomes

Language:PythonBSD-3-Clause8 2 68

attention-all-microbes

Language:Python5 3 12

asd_multiomics_analyses

Jupyter notebooks behind "Multi-omic analysis along the gut-brain axis points to a functional architecture of autism"

Language:Jupyter Notebook5 30

micov

Aggregate genome coverage

Language:PythonNOASSERTION3 5 8

mxdx

Generalized multiplexing / demultiplexing for FASTQ/FASTA/SAM

Language:PythonBSD-3-Clause3 20

nvim

Language:Lua2 10

snakemake_metagenomics

Input SRA IDs, output biom tables

Language:Jupyter NotebookMIT2 10

admixture

Language:PythonMIT2 2 3

Tulsa1000_microbiome

Code to generate figures for Tulsa manusript

Language:Jupyter Notebook1 10

redgenes

Relational Database of Microbial Genomes (Redgenes)

Language:PythonBSD-3-Clause1 30

skincom_analysis

Language:Jupyter Notebook1 10

qadabra_benchmarking

Language:Python1 10