Beast code in Giters

Brace's repositories

BedAnno

Annotate genomics variations of hg19 by using a BED format database, which construct from NCBI annotation release 104

Language:PerlLGPL-3.018 6 17

cephes

Mirror of the Cephes C source for reference

Language:C1 30

git-aware-prompt

Display current Git branch name in your terminal prompt when in a Git working directory.

Language:ShellCC0-1.01 20

api-example-flask

An example Python app on 23andMe's genome API using the flask microframework.

Language:Python020

AutoGPT

An experimental open-source attempt to make GPT-4 fully autonomous.

Language:JavaScriptMIT000

bcbio.variation

Toolkit to analyze genomic variation data, built on the GATK with Clojure

Language:Clojure020

centos-ldc

CentOS 6.5 with latest stable version of LDC compiler installed

Language:Shell000

DeepOmix

A Multi-Omics Scalable and Interpretable Deep Learning Framework and Application in Cancer Survival Prediction

Language:PythonGPL-3.0020

facets

Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

Language:R020

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Language:C++MIT020

gencore

Generate consensus reads to reduce sequencing noises and remove duplications

Language:C++MIT020

gridmap

Easily map Python functions onto a cluster using a DRMAA-compatible grid engine like Sun Grid Engine (SGE).

Language:PythonGPL-3.0020

grok-1

Grok open release

Apache-2.0000

hgvs

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

Language:PythonApache-2.0020

libgd

GD is an open source code library for the dynamic creation of images by programmers. GD creates PNG, JPEG and GIF images, among other formats.

Language:C020

ltnetcase.github.io

Home of A Farmer

Language:CSS020

pctGCdata

R datasets of GC percentages for human and mouse genomes

Language:R010

perlmod_faidx

Perl extension for retrieve fasta seq quickly and lightly by cached samtools index file

Language:C010

plotly.py

the browser-based graphing library for python

Language:PythonMIT010

pyhgvs

HGVS variant name parsing and generation

MIT000

ReporteRs

Note that ReporteRs has been removed from CRAN the 16th of July 2018 and is not maintained anymore. please migrate to officer.

000

silk-v3-decoder

[Skype Silk Codec SDK]Decode silk v3 audio files (like wechat amr, aud files, qq slk files) and convert to other format (like mp3). Batch conversion support.

Language:CMIT020

so-2908822

Code for my answer on StackOverflow (http://stackoverflow.com/a/2970284/168747)

Language:RMIT000

STAR

RNA-seq aligner

Language:CMIT010

svgo

Go Language Library for SVG generation

Language:GoNOASSERTION020

wallproxy

An intelligent scalable proxy framework

Language:Python010