lskatz / fasten

:construction_worker: Fasten toolkit, for streaming operations on fastq files

lskatz/fasten Issues

it would be great to update your io code to allow reading and writing of compressed files
Updated 3 months ago
[suggestion] Document, eventually enforce, input format
Closed 5 months ago1
fastq_mutate should always give -m mutations?
Closed 5 months ago
Feature: Add command to convert to interleaved format and back from interleaved format back to 2 FASTQ files.
Closed 5 months ago1
JOSS Review
Closed 5 months ago8
JOSS Paper citations
Closed 8 months ago1
Clarify README summary
Closed 8 months ago1
Consider adding documentation about `cargo install fasten`
Closed 8 months ago1
Consider std::io::Stdin instead of File('/dev/stdin')
Updated 8 months ago1
Feature Request: handle seqlen != quallen
Closed 9 months ago3
docs on what fasten_validate does?
Closed 2 years ago2
fasten_trim reporting what it trimmed
Updated 3 years ago
add progress meter
Closed 3 years ago1
numcpus does not work
Updated 3 years ago10