lrjoshi

ProbeTools

Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa

BI-BE-CS-183-2023

Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023

flextable

table farming

tidyomics

Easily install and load packages from the tidyomcis ecosystem

tree-subset-shiny

This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees

tape

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.

awesome-notion

A curated list of awesome Notion related things.

DNABERT_2

[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

DNABERT

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

scrollama

Scrollytelling with IntersectionObserver.

awesome-ggplot2

A curated list of awesome ggplot2 tutorials, packages etc.

viral-ngs

Viral genomics analysis pipelines

GREIN

GREIN : GEO RNA-seq Experiments Interactive Navigator

IgLM

Generative Language Modeling for Antibody Design

cytoflow

A Python toolbox for quantitative, reproducible flow cytometry analysis

beer

Bayesian enrichment estimation in R

phip-stat

Analysis tools for PhIP-seq experiments

ggplot_tricks

Here, I collect some tricks I've learned about the {ggplot2} R package

rweekly.org

R Weekly

BondPack

A collection of PyMOL plugins to visualize atomic bonds.

ViReflow

An elastically-scaling automated AWS pipeline for viral consensus sequence generation

phydms

phylogenetic analyses informed by deep mutational scanning data

RNAlysis

Analyze your RNA sequencing data without writing a single line of code

systemsseRology

Machine learning tools for the analysis of systems serology data

IgFold

Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

ImmunoCluster

ggblend

Support for blend modes in ggplot2

pilot

A minimal ggplot2 theme with an accessible discrete color palette.

postcards

💌 Create simple, beautiful personal websites and landing pages using only R Markdown.

correlation

:link: Methods for Correlation Analysis