lrjoshi / FastaTabular

Conversion of Fasta format to Tabular format and vice versa

FastaTabular

Conversion of Fasta format to Tabular format and vice versa

You can import functions present in this repository directly to R Studio

library (devtools)

library (tidyverse)

source_url("https://raw.githubusercontent.com/lrjoshi/FastaTabular/master/fasta_and_tabular.R")

After completing this, following functions should be available for use. Note: For tabular data, it should be in CSV format. First column should contain gene name and seceond column should contain sequence. Look at the gene.csv file in this repository for template.

To convert fasta format to the tabular format

FastaToTabular("dna_fasta.fasta")

To convert tabular format to fasta format

TabularToFasta("gene.csv")

If you get permission error while writing files, try to create a new directory and set that directory as working directory.

Dependency

Tidyverse