lrfreeman

ARENA_3.0

mlab

Machine Learning for Alignment Bootcamp (MLAB).

resreg

Resampling strategies for regression

neural-data-transformers

MML-Book

Code / solutions for Mathematics for Machine Learning (MML Book)

ripser.py

A Lean Persistent Homology Library for Python

python-snippets

Useful python code snippets.

ecephys_spike_sorting

Modules for processing extracellular electrophysiology data from Neuropixels probes

purejaxrl

Really Fast End-to-End Jax RL Implementations

chatgpt-equations

Chrome extension that allows you to visualize equations using Latex notation inside ChatGPT

polars

Dataframes powered by a multithreaded, vectorized query engine, written in Rust

educational

GMM-EM-Python

Python implementation of EM algorithm for GMM. And visualization for 2D case.

neuropixels_trajectory_explorer

Neuropixels trajectory explorer with the Allen CCF mouse atlas

warhmm

GLMHMM

glmhmm

code to fit GLMs, HMMs, and GLM-HMMs (aka IO-HMMs)

lfads-run-manager

Matlab interface for Latent Factor Analysis via Dynamical Systems (LFADS)

PRML-Solution-Manual

My Own Solution Manual of PRML

aeon_blog

Project Aeon's "meta" repo that details the project, with a focus on dev practices and notes on technology review, challenges and insights.

aeon_mecha

Project Aeon's main library for interfacing with acquired data. Contains modules for raw data file io, data querying, data processing, data qc, database ingestion, and building computational data pipelines.

DeepLabCut

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

ephysiopy

Analysis of electrophysiological data recorded using Axona and openephys using Python

fcutils

Bunch of utility functions that I use across a number of repos

CEBRA

Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA

LocomotionControl

unreal-reinforcement

reinforcement learning example for unreal engine using openai baselines and obviously unreal engine! duh!

gym-unrealcv

Unreal environments for reinforcement learning

SimplePyTorch

UE4 Plugin to execute trained PyTorch modules

Neural_Decoding

A python package that includes many methods for decoding neural activity