lptolik

BioNAR

Biological Network Analysis in R

SpatialKappa

An implementation of spatial language extensions to Kappa

AnNet

Analysis of Networks

lptolik.github.io

ShapleyDataR

synaptome.db

bioc_hub_server_docker

A dockerized version of the Bioconductor Hub Server

biocthis

Automate package and project setup for Bioconductor packages

BioNAR_paper_supplementary

Case studies and supplementary materials for BioNAR paper

bitnami-docker-dokuwiki

Bitnami Docker Image for DokuWiki

CGRtools

CGRs, molecules and reactions manipulation

covid19model

Code for modelling estimated deaths and cases for COVID19.

DataShapley

Data Shapley: Equitable Valuation of Data for Machine Learning

fastshap

Fast approximate Shapley values in R

FBA-PRCC

Sensitivity analysis of FBA models

FBA-PRCC_paper

Source code and data for the FBA-PRCC paper

LLMPromptSelector

microbiome-metabolome-curated-data

MOFA2

Multi-Omics Factor Analysis

obsidian-daily-stats

Plugin to view your daily word count across all notes in your Obsidian.md vault.

PhenotypePredictor

Workflow for executing functional annotation and metabolic phenotype assignement to microbial genomes

PyNeuron-Toolbox

Some python functions to supplement the NEURON python module

resumer

Package for building resumes with R

reviewAssembler

R script to prepare review paper

scalaBiomeDB

Scala library for filling Neo4j database with biological data.

slurm_scripts

scripts to handle asar data with slurm

synaptome.data

AnnotationData for Synaptome.DB package

uct-srst2

MLST using srst2, implemented in Nextflow

Williams-etal-Synaptic-Transport

Code and Supplementary Notes for Williams et al. (2016) "Dendritic trafficking faces physiologically critical speed-precision tradeoffs."

YAMP

YAMP: Yet Another Metagenomic Pipeline