Leszek Pryszcz (lpryszcz)

lpryszcz

Geek Repo

Company:CRG

Location:Barcelona

Home Page:http://bioinfoexpert.com/

Github PK Tool:Github PK Tool

Leszek Pryszcz's repositories

bin

My bioinfo toolbox

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pyScaf

Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.

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REDiscover

RNA editing discovery from NGS data.

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rapsi

Rapid similarity search for proteins

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HiCembler

Assembler for HiC data

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abstracts

Create the Book of Abstracts from responses in spreadsheet (.xlsx) / google forms

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badges

Repository to create badges for the attendees of conference/workshop

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bioconda-recipes

Conda recipes for the bioconda channel.

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bonito

Convolution Basecaller for Oxford Nanopore Reads

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Chiron

A basecaller for Oxford Nanopore Technologies' sequencers

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deeplexicon

Signal based nanopore RNA demultiplexing with convolutional neural networks

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dorado

A LibTorch Basecaller for Oxford Nanopore Reads

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eif

Extended Isolation Forest for Anomaly Detection

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emacs-for-python

Collection of emacs extensions specifically collected for python development, with workflow guidelines!

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go

Playground for golang

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jetson_nanopore_sequencing

A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.

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latex-moderncv

My latex resume using the moderncv template

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megSAP

a Medical Genetics Sequence Analysis Pipeline

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monty_hall

simple implementation demonstrating Monty Hall

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nanoRMS

Prediction of RNA modification stoichiometry from per-read current intensity information using KNN and KMEANS algorithms

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ont_fast5_api

Oxford Nanopore Technologies fast5 API software

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OpenDBA

GPU-accelerated Dynamic Time Warp (DTW) Barycenter Averaging

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pyguppyclient

Python client library for Guppy

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pytorch-tutorial

PyTorch Tutorial for Deep Learning Researchers

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singularity-userdocs

User Documentation

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taiyaki

Training models for basecalling Oxford Nanopore reads

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tombo

Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.

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