lottpaul

GettingStartedBioinformatics

This repository contains some resource and course material that I've used for new undergraduate and graduate bioinformatics trainees.

assignments

Assignments!

bam-readcount

count DNA sequence reads in BAM files

BasicHTMLDemo

BasicHTMLWebsite

blheli-multishot

course-info

Bio 302 syllabus etc.

Cplusplus_tutorial

C++ Tutorial Examples

dataduct

DataPipeline for humans.

Deep-Learning-101

Deep Learning Tutorials

django-progressbarupload

Progress bar upload for Django

DoesNaughtCompute

Code and example datasets for Does[0]Compute

dokomoforms

Dokomo どこも Forms is a mobile data collection technology that doesn't suck.

eigensoft

This tracks my experimental modifications to EIGENSOFT 5.

gwas_scripts

Codebook from my GWAS cookbook

Lessons

libharu

libharu - free PDF library

nanpy

Use your Arduino board with Python.

nanpy-firmware

Nanpy firmware repository

oneliners

Useful bash one-liners for bioinformatics.

Orignal-Prusa-i3

Prusa i3 Plus 3D printer

Problem-Solving-with-Algorithms-and-Data-Structures-Using-Python

Examples and work from Problem Solving with Algorithms and Data Structures Using Python

PyVCF

A Variant Call Format reader for Python.

SAGU

Simple Amazon Glacier Uploader. GUI Client for Amazon Glacier. Win/Mac/Linux

scythe

A 3'-end adapter contaminant trimmer

selectionTools

Pipeline to take VCF through to Selection Analysis.

sickle

Windowed Adaptive Trimming for fastq files using quality

snakemake-parallel-bwa

A Snakefile to parallelize bwa.

timeout

A script to measure and limit CPU time and memory consumption of black-box processes in Linux

warehouse-apps