lopaavol

mihc-suppl-software

Code repository for paper Systems pathology by multiplexed immunohistochemistry and whole-slide digital image analysis

caf-nsclc-paper

nuclei_segmentation

Python utilities to apply pre-trained Mask R-CNN model for nuclei segmentation

CP-plugins

CellProfiler modules and plugins

cytomining-hackathon-wiki

Cytomining Hackathon 2016

OPutils

Python utils to process imaging data collected with Opera Phenix at FIMM High Content Imaging and Analysis unit

piximi-application

A web application for classifying objects

piximi-autotuner

Hyperparameter search module for tensorflow.js

piximi-components

Piximi’s generic React components

piximi-image-dialog

Piximi’s ImageDialog component

piximi-models

Piximi’s TensorFlow.js models

piximi-navigation-drawer

Piximi’s NavigationDrawer component

piximi-store

Piximi’s Redux actions, reducers, and selectors

recursion-cytohackathon-2017

2017 Cytomining hackathon challenge results

thl-covid19

Visualization of THL daily COVID-19 information

W_NucleiSegmentation-MaskRCNN

BIAFLOWS Mask R-CNN workflow.

W_Template

Workflow template repository