lokhande-vishnu / MultisitePooling

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CONSTRAINED HARMONIZATION ALGORITHM FOR POOLING MULTI-SITE DATASETS

Summary

Pooling datasets from multiple studies can significantly improve statistical power: larger sample sizes can enable the identification of otherwise weak disease-specific patterns. When modern learning methods are utilized (e.g., for predicting progression to dementia), differences in data acquisition-methods / scanner-protocols can enable the model to “cheat”, i.e. utilizes site-specific artifacts rather than disease-specific features. In this study, we develop a method to harmonize the performance of DNN classifiers across scanners/sites, via so-called fairness constraints, thereby encouraging consistent behavior while controlling for site-specific nuisance variables.

Code

Code will be made available upon request.

Other Project particulars

The slides are available in the main directory with the title slides_multisitepooling.pdf. We have a video going over the slides on youtube at this link https://youtu.be/xEgcujq2QmU.

About

License:MIT License