Lane McIntosh's repositories
deep-retina-tutorial
Tutorial for exploring models of retinal responses to natural scenes.
ipython-notebooks
A repository of my iPython notebooks; basically lab notebooks for computation!
information-theory-toolbox
Scripts to empirically estimate mutual information and entropy between random vectors.
event-recognition
Code for automatically flagging (mounted) surveillance videos for new objects.
retina-simulation
Code for simulating the retina.
diamondhead
Script to determine if the stock market is currently over or underpriced based on historical averages, then text me the fraction of stocks to buy and cash to hold.
masters-thesis
Code for simulating an adaptive, exponential integrate-and-fire neuron and analyzing its predictive power and memory.
perception
Materials for helping teach the undergraduate class Introduction to Perception.
photo-compare
Compare two similar photos and select the best one.
retina-analysis
Functions and scripts for analyzing multielectrode array data collected from tiger salamander and rodent retina.
surround-size
Code to simulate linear-nonlinear-linear models. This project involves finding the optimal surround size for multilayered systems with respect to efficient coding.
aesthetics
A handy package to keep all my aesthetics functions in one place
annotated-papers
A short description of the papers I'm reading.
cell-classification
Scripts to classify neurons in cortical microcircuits. Written in 2010 for the MacLean lab at University of Chicago.
cell-health
Scripts for determining the health of neurons during electrophysiology. Written for the MacLean lab at University of Chicago.
cnv-finder
A ruby package for finding copy number variants in gene microarray data. Archival bioinformatics work for the Simons Center for Systems Biology at the Institute for Advanced Study, Princeton, NJ in 2009.
conv-batchnorm
Convolutional batch normalization for computing local gain normalization with translation invariant parameters.
experiment-tools
Miscellaneous python tools to pre-process multielectrode array retinal recordings
hyperopt
Distributed Asynchronous Hyperparameter Optimization in Python
jetpack
:fallen_leaf: useful functions and utilities for scientific python
natural-scenes
Python module for efficiently loading natural scene stimuli.