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Lluís Revilla's repositories

Viterbi

Example of Viterbi algorithm

Language:Python15 30

WGCNA

:exclamation: This is a modified version of the CRAN R package repository. WGCNA — Weighted Correlation Network Analysis

Language:RGPL-3.03 3 5

Rhea

A set of R scripts for the analysis of microbial profiles

Language:RMIT2 30

IEO

Project to analyze Thyroid carcinoma data from the TCGA project.

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10.1038

Tries to reproduce letter of Nature with doi:10.1038/nature14468

Language:R030

ANTI-TNF

Code for the anti-TNF project

Language:R030

bills

OCR on bills using python for personal usage

Language:Python020

biomart

Python biomart API

Language:PythonBSD-2-Clause02 4

biopython

llrs non official version of biopython

Language:PythonNOASSERTION020

clusternomics

Integrative clustering for heterogeneous biomedical datasets.

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Comparer

The current code I developed to compare the examples programs

Language:Python030

EGSEA

This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.

Language:R030

Game2

Like a MUD, but not dungeon, not multiplayer

Language:Python020

GOSemSim

:golf:GO-terms Semantic Similarity Measures

Language:R020

GSCA

Gene Set Coexpression Analysis

Language:CLGPL-2.1030

HA-WGCNA

Reanalysing some data with WGCNA

Language:R000

Hmmer_parser

Test, let's see if it works

Language:PythonGPL-2.003 1

miRNA-HA

Efforts to relate miRNA from blood to clinical variables from alcoholic hepatitis

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NGS

Making some comparisons of NGS data

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ontologyIndex

ontologyIndex Functions for Reading Ontologies into R

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pathclust

pathclust: Pathway-guided identification of cancer subtypes

Language:R020

Perl

Some programs in perl

Language:PerlGPL-2.0030

phenoClust

R implementation of phenoClust

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Random_Genes

The code that generated the analysis presented in the manuscript "Association Between Expression of Random Gene Sets and Survival is Evident in Multiple Cancer Types and May be Explained by Sub-Classification"

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sets

:exclamation: This is a read-only mirror of the CRAN R package repository. sets — Sets, Generalized Sets, Customizable Sets and Intervals

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STATegRa

Forked repository of STATegRa package in Bioconductor

Language:RGPL-2.0030

TFM

Code of my master project using WGCNA.

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topGO-1

Enrichment Analysis for Gene Ontology

Language:R030