Lloyd Russell's repositories
SLMPhaseMaskMaker3D
Generates phase masks for display on an SLM using a weighted GS algorithm
Bruker_PrairieLink
Stream data from PrairieView into MATLAB to allow online processing and analysis
PyBehaviour
Software and hardware for control of operant conditioning behavioural experiments
SLMPhaseMaskMaker
Implements a weighted GS algorithm using Martin Perssons HOTlab DLL
STAMovieMaker
Generate stimulus triggered average movies and images from activity imaging data
SLMTransformMaker3D
Calculate the transform required to map 2P imaging space onto SLM space
cellposeForNaparm
a little utility to generate cellpose rois for use with naparm
SLMPhaseMaskMaker_PythonCUDA
Generate SLM phase masks (Python, CUDA)
ca_source_extraction
Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.
constrained-foopsi
Implementation of the constrained deconvolution spike inference algorithm in Matlab
Constrained_NMF
Python implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.
sima
Python package for analysis of dynamic fluorescence microscopy data
SLMPhaseMaskMaker_LightPipes
Generate SLM phase masks (MATLAB)
SLMTransformMaker
Calculate the transform required to map 2P imaging space onto SLM space
sta
Standalone python module for performing triggered averaging