Lucille Delisle's repositories
galaxyduboule-infrastructure
Everything needed to maintain galaxyduboule or reinstall it from scratch.
galaxydubouleBioblendScripts
Python scripts using bioblend to interact with galaxy more automatically
tools-lldelisle
Tool Shed repositories maintained by Lucille Lopez-Delisle
bioconda-recipes
Conda recipes for the bioconda channel.
rnaseq_rscripts
Rscripts with config files to analyse/plot RNAseq data
BREW3R
Bulk RNA-seq Evidence-based Workflow for 3' UTR Reannotation
BREW3R.r
The BREW3R.r package to extend GRanges
CITE-seq-Count
A tool that allows to get UMI counts from a single cell protein assay
galaxy-hub
Galaxy Community Hub
galaxytools
:microscope::books: Galaxy Tool wrappers
HiCBrowser
Simple web browser to visualize HiC tracks
HiCUP
Hi-C data processing pipeline
ijp-max-inscribed-circles
ImageJ/Fiji plugin that fills a mask or selection with the largest inscribed cirlces
iwc
Intergalactic Workflow Commission
lldelisle-docker
Dockerfiles for containers from Lucille Delisle
multi-package-containers
Testing building mulled containers for multi-requirement tools.
planemo
Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.
pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
scriptsAroundBaredSCForDarbellayEtAl2024
All scripts used around baredSC (from baredSC run to figure) in Darbellay et al. 2024.
scriptsForLopezDelisleEtAl2021
All the scripts needed to reproduce the figures in Lopez-Delisle and Delisle 2021.
toolBoxForMutantAndWTGenomes
Rscripts to manipulate fasta or gtf.
training-material
A collection of Galaxy-related training material
usegalaxy-eu-tools
List of tools included in https://usegalaxy.eu
usegalaxy-tools
usegalaxy.* common tools