Leon Kuchenbecker's repositories
EntrezDownloader
Parallel Entrez Downloads
a2mgaps
Plot MSA gap statistics from an a2m file
create-demo
Example of building Sphinx docs to GitHub Pages
diaproteomics
Automated quantitative analysis of DIA proteomics mass spectrometry measurements.
dirvish-on-demand
A wrapper for dirvish to enable on demand backups of clients in the local network
epitopeprediction
A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
fred
Python-based framework for computational immunomics
httpx
A next generation HTTP client for Python. 🦋
linkml
Linked Open Data Modeling Language
linkml-runtime
Runtime support for linkml generated models
mhcquant
Identify and quantify peptides from mass spectrometry raw data
OpenMS
The codebase of the OpenMS project
OptiType
Precision HLA typing from next-generation sequencing data
percolator
Semi-supervised learning for peptide identification from shotgun proteomics datasets
pre-commit-hooks
Some out-of-the-box hooks for pre-commit
pyramid
Pyramid - A Python web framework
pyramid_openapi3
Pyramid addon for OpenAPI3 validation of requests and responses.
pyramid_tm
Centralized transaction management for Pyramid applications (without middleware)
seqan
SeqAn's official repository.
snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
test-datasets
Test data to be used for automated testing with the nf-core pipelines
UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..