ljyanesm

pynb

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

ondaCUDA

Finite differences wave propagation on the GPU

asub

A unified array job submitter for LSF, SGE/UGE and Slurm

cheatsheets

My cheatsheets

cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

dkr-awscli-tf

dotfiles

Based on lewagon's dotfiles! Thanks guys :)

dtool-lookup-server

Given a dataset UUID returns a URI to where the dataset is stored

ei-liftover

Repository to transfer gene models across (sub)genomes and check their coherence.

gffread

GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more

helm-charts

Helm Charts used to install Kiali resources.

hera-workflows-feedstock

A conda-smithy repository for hera-workflows.

homebrew-bio

:beer::microscope: Bioinformatics formulae for the Homebrew package manager (macOS and Linux)

IBSpy

Python library to identify Identical By State regions

istio

Connect, secure, control, and observe services.

k8s-device-plugin

NVIDIA device plugin for Kubernetes

kseqcpp

A c++ port of @lh3 kseq.h

openidconnect-rs

OpenID Connect Library for Rust

pbrenderer

pinfish

Tools to annotate genomes using long read transcriptomics data

ranger

A Fast Implementation of Random Forests

rdkit

The official sources for the RDKit library

sc_seminar

github.io site for the sc_seminar

seqtk

Toolkit for processing sequences in FASTA/Q formats

spack

A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

spaln

Genome mapping and spliced alignment of cDNA or amino acid sequences

spliced_bam2gff

stringtie

Transcript assembly and quantification for RNA-Seq

wdl

Workflow Description Language - Specification and Implementations