liyuan39

Benchmarking_Clustering_Methods_scRNAseq

attributed-community-detection

Master Project

MD-analysis-tools-scripts

Tools and scripts for analyses of molecular dynamics simulations

yelp

Community Detection on the Yelp Dataset

monocle3

ovx_ve

Ovariectomized: Vehicle vs. E2 (24h)

stLearn

A novel machine learning pipeline to analyse spatial transcriptomics data

scanpy

A repository for the scanpy module of the vib-singlecell-nf pipeline

dvc-pipelines

GraphSCC

single-cell RNA-seq clustering

SCSA

SCSA: cell type annotation for single-cell RNA-seq data

clustering_on_transcript_compatibility_counts

Clustering cells from single cell RNA seq assays

SC3

A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments

rna-seq-tsne

The art of using t-SNE for single-cell transcriptomics

scde

R package for analyzing single-cell RNA-seq data

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

single-cell-tutorial

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"