liyuan39

liyuan39

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MD-analysis-tools-scripts

Tools and scripts for analyses of molecular dynamics simulations

License:MITStargazers:8Issues:0Issues:0

yelp

Community Detection on the Yelp Dataset

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ovx_ve

Ovariectomized: Vehicle vs. E2 (24h)

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stLearn

A novel machine learning pipeline to analyse spatial transcriptomics data

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scanpy

A repository for the scanpy module of the vib-singlecell-nf pipeline

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GraphSCC

single-cell RNA-seq clustering

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SCSA

SCSA: cell type annotation for single-cell RNA-seq data

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clustering_on_transcript_compatibility_counts

Clustering cells from single cell RNA seq assays

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SC3

A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments

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rna-seq-tsne

The art of using t-SNE for single-cell transcriptomics

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scde

R package for analyzing single-cell RNA-seq data

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rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

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single-cell-tutorial

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

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