Xiangchun Li's repositories
rstanarm
rstanarm R package for Bayesian applied regression modeling
TensorFlow-Examples
TensorFlow tutorials and code examples for beginners
tensorflow_tutorials
From the basics to slightly more interesting applications of Tensorflow
TitanCNA
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/TitanCNA.html Contributions: https://github.com/gavinha/TitanCNA. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=TitanCNA.
comet
CoMEt: A Statistical Approach to Identify Combinations of Mutually Exclusive Alterations in Cancer
msig
mutation signature extraction
stacked-denoising-autoencoders
sklearn wrappers for stacked denoising autoencoders
plotr
More plotting functions and examples.
ggally
R package that extends ggplot2
try-tf
Simple code for trying out TensorFlow with simulated datasets
survMisc
survMisc
Miscellaneous-R-Code
Code that might be useful to others for learning/demonstration purposes.
Deep-Semi-NMF
Theano-based implementation of Deep Semi-NMF.
decipherExpressionSignatures
Deciphering gene expression signature for high throughput data
Support-Vector-Machine
MATLAB implementation of the Support Vector Machine algorithm
MCP05
Scripts associated with Mouse ENCODE companion paper, Pope et al. Nature 2014 "Topologically-associating domains are stable units of replication-timing regulation" (doi:10.1038/nature13986)
EMu
An Expectation-Maximization algorithm to infer mutational signatures
somatic-benchmark
Tools for comparing somatic variant calling tools.