DeepCAPE is a deep convolutional neural network to predict enhancers via the integration of DNA sequences and corresponding DNase-seq data.
- hickle
- random
- keras=1.2.0
- numpy=1.14.0
- tensorflow=0.11.0
Download DeepCAPE by
git clone https://github.com/ShengquanChen/DeepCAPE Arguments:
inputfile: preprocessed data (hkl format)
outputfile: trained model (h5 format)
Installation has been tested in a Linux/MacOS platform with Python2.7.
This project is licensed under the MIT License - see the LICENSE file for details