liuyongcds

PhageRank

A suite for M13 phage display data analysis

vdjer

V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data

human-mitoribosome-profiling

awesome-cmake

A curated list of awesome CMake resources, scripts, modules and examples.

bookshelf

:books: books

blog

对过往做做总结

project_template

An example of how to organize files for a research project to increase reproducibility

awesome-cheatsheets

👩‍💻👨‍💻 Awesome cheatsheets for popular programming languages, frameworks and development tools. They include everything you should know in one single file.

CS-Base

图解计算机网络、操作系统、计算机组成、数据库，共 1000 张图 + 50 万字，破除晦涩难懂的计算机基础知识，让天下没有难懂的八股文！🚀 在线阅读：https://xiaolincoding.com

deepmito

DeepMito - Prediction of protein sub-mitochondrial localization using deep learning

MAGeCK

Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology.

iMLP

codebase and dotnet CLI tool for prediction of iMTS-Ls

git-recipes

🥡 Git recipes in Chinese by Zhongyi Tong. 高质量的Git中文教程.

machine-learning-deep-learning-notes

机器学习、深度学习的学习路径及知识总结

expert_readed_books

2021年最新总结，推荐工程师合适读本，计算机科学，软件技术，创业，**类，数学类，人物传记书籍

Guideline-for-Computational-Biology-and-Bioinformatics

alphamap

An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.

oneliners

Useful bash one-liners for bioinformatics.

Rfast

:exclamation: This is a read-only mirror of the CRAN R package repository. Rfast — A Collection of Efficient and Extremely Fast R Functions. Homepage: https://github.com/RfastOfficial/Rfast Report bugs for this package: https://github.com/RfastOfficial/Rfast/issues

argparser

:exclamation: This is a read-only mirror of the CRAN R package repository. argparser — Command-Line Argument Parser. Homepage: https://bitbucket.org/djhshih/argparser Report bugs for this package: https://bitbucket.org/djhshih/argparser/issues

cutadapt

Cutadapt removes adapter sequences from sequencing reads

fivepseq

An application for analysis of 5′ endpoints distribution in RNA sequencing datasets. This is particularly useful for techniques that capture 5′ monophosphorylated RNAs, such as 5PSeq, PARE-seq or GMUC. It may also be useful for ribosome profiling datasets and alike.The main workflow of fivepseq is intended for downstream analysis of alignment files to describe the distribution of 5′ endpoints of reads relative to translation start and stop sites, as well as relative to amino acids or codons. It also computes frame preference of 5′ endpoint distribution and captures periodicity patterns.

MitoRiboSeq

Codes for processing mitochondrial ribosome profiling data

DGE_workshop

2018_Bacterial_Pipeline_riboseq

Ribosome profiling pipeline for bacterial samples created by Fuad Mohammad.

mgatk

mgatk: mitochondrial genome analysis toolkit

bowtie

An ultrafast memory-efficient short read aligner

riboviz

Analysis and Visualization of Ribosome Profiling Data

riboWaltz

optimization of ribosome P-site positioning in ribosome profiling data

auto-annotation-md

Auto-annotations from Mouse brain development