Yang Liu's repositories
atac-seq-pipeline
ENCODE ATAC-seq pipeline
awesome-pipeline
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
cardiac-progenitors
Coming soon: scRNA-seq analysis of cardiac progenitor cells
CerebellumDev
Code for processing data
ChIPseeker
:dart:ChIP peak Annotation, Comparison and Visualization
clusterProfiler
:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters
Cookbook-for-R-Chinese
:books:Cookbook for R 中文翻译
crAssphage_project
Source code for the crAssphage project
In-depth-NGS-Data-Analysis-Course
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
MACS
MACS -- Model-based Analysis of ChIP-Seq
Maier_et_al_nature_2020
This repository contains scripts used for analysis and figure generation in Maier, B., Leader, A.M., Chen, S.T. et al. A conserved dendritic-cell regulatory program limits antitumour immunity. Nature 580, 257–262 (2020). https://doi.org/10.1038/s41586-020-2134-y
NGS-pipeline
By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline
pagoda2
R package for analyzing and interactively exploring large single-cell RNA-seq datasets
Paired-seq
Paired-seq
picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
plate_scATAC-seq
A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method
scATACworkflow
Cellomics Institute
scRNA.seq.course
Analysis of single cell RNA-seq data course
SDA
Segmental Duplication Assembler (SDA).
shixiangwang
a personal website powered by Hugo
tabula-muris
Code and annotations for the Tabula Muris single-cell transcriptomic dataset.
tensorflow_notebook
【北京大学】人工智能实践：Tensorflow笔记 手敲代码共享
tensorflow_notebook-1
tensorflow notebook\人工智能实践
WeChatExtension-ForMac
Mac版微信的功能拓展(A plugin for Mac WeChat)