liuxch5's repositories
analyzeR
An R Shiny app that accepts a CSV file with data, and outputs high level regression analysis.
data_explorer
Shiny app
scrublet
Detect doublets in single-cell RNA-seq data
DNABarcodeCompatibility_Shiny
Web interface for DNABarcodeCompatibility
fastqcr
fastqcr: Quality Control of Sequencing Data
pcaExplorer_serveredition
The Server Edition for pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
EnImpute
V20190112
sema
SEMA is a graphical hypothesis testing platform for multidimensional cancer genomics data
magic
Tool to identify monoallelic expression in polyclonal samples using ChIP-Seq data.
miRFA
Functional analysis of miRNA including 1) miRNA target prediction, 2) correlation analyses between miRNA-target gene on mRNA (the cancer genome atlas) and protein levels (The cancer proteome atlas) 3) functional enrichment of significantly (positively and negatively) correlated miRNA targets.
LipidMiniOn
Shiny interface for the Lipid Mining and Ontology (Lipid Mini-On) tool, which uses the Rodin R package
timeseriesNEM
timeseriesNEM
School-of-Data-RR
School of Data
tftargets
:dart: Human transcription factor target genes.
DiffNetFDR
DiffNetFDR
ShinyCNV
a Shiny/R application to view and annotate copy number variations
LocusExplorer
An interactive graphical illustration of genetic associations and their biological context
docfetcher
docfetcher with new features
ALTRE
ALTered Regulatory Elements
simExTargId
Developed by William Edmands and supported by Josie Hayes
iDINGO
iDINGO R package to estimate group-specific integrative networks and make inference on the integrative differential networks, considering the biological hierarchy among the platforms
TH2-demos
演示如何使用天河2号及解决常见问题
Microscope
ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps
AppScanGEO
Source code for ScanGEO Shiny App