liu3zhenlab

Sanzhen Liu's repositories

homotools

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KAD

Assessing genome assemblies using K-mer copies in assemblies and K-mer abundance in Illumina reads

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A188Ref1

the process to build the first A188 reference genome

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bio_scripts

sharing scripts

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CGRD

Comparative Genomics Read Depth

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teaching

Teaching materials

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hicsalsa

HiC scaffolding using Arima and Salsa pipelines

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liu3zhenlab.github.io

Webpages of Sanzhen Liu laboratory

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manuscripts

collection of scripts used in published manuscripts

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collected_data

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easysbatch

scripts and parameter documents for slurm array submissions

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genomap

R scripts for genotyping

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github-slideshow

A robot powered training repository :robot:

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liulab

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muprimer

a small script to design primers for Mu insertions

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ndotplot

Plot a dotplot using Nucmer alignments

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npcor

batched contig polishing with Nanopolish using Slurm scheduler

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test

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vcfbox

Perl scripts to handle variant data: format conversion, variant filtration, taxon filtration, and so on.

Language:PerlMIT000