Liu Weiqiang (liu-wq)

liu-wq

Geek Repo

Company:INSTITUTE OF ZOOLOGY, CHINESE ACADEMY OF SCIENCES

Location:Beijing, China

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Liu Weiqiang's repositories

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getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics and data science

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ratite-genomics

Scripts and other material for the assembly and analysis of ratite genomes.

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assemblage

Tools for working with second gen assemblies, fasta sequences, etc

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Cpp-0-1-Resource

C++ 匠心之作 从0到1入门资料

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EasyMicrobiome

Scripts and databases for amplicon and metagenome

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EVEE-Tools

EVEE-Tools is a suite of scripts for analyzing expression evolution across species.

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ForwardGenomics

Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework

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killigenomics

Killifish genomics scripts

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learnnote

Bioinformatics

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MAKER-genome-annotations-tutorial

Construct ab initio gene prediction using only BUSCO augustus models. Add in transcriptome for extra support

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Methylation_Analysis

Learn methylation

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mixr

MIXR: Mismatching Isoform eXon Remover

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polysel

Pipeline to detect polygenic selection in gene sets

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Reg_Evo_Primates

This is a GitHub repo for a project studying gene expression and methylation in humans, chimpanzees, and rhesus macaques. The website of this work can be found at:

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Regulatory_Evol

The website with the results can be found at https://lauren-blake.github.io/Regulatory_Evol/analysis/

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rna-seq-diff-exprn

RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code and plots, differential expression (via DESeq and NOISeq), structural variant detection (e.g. fusion genes, via SVDetect) and differential exon usage (via DEXSeq).

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