Liu Weiqiang's repositories
getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
ratite-genomics
Scripts and other material for the assembly and analysis of ratite genomes.
assemblage
Tools for working with second gen assemblies, fasta sequences, etc
Cpp-0-1-Resource
C++ 匠心之作 从0到1入门资料
EasyMicrobiome
Scripts and databases for amplicon and metagenome
EVEE-Tools
EVEE-Tools is a suite of scripts for analyzing expression evolution across species.
ForwardGenomics
Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework
killigenomics
Killifish genomics scripts
MAKER-genome-annotations-tutorial
Construct ab initio gene prediction using only BUSCO augustus models. Add in transcriptome for extra support
Methylation_Analysis
Learn methylation
Reg_Evo_Primates
This is a GitHub repo for a project studying gene expression and methylation in humans, chimpanzees, and rhesus macaques. The website of this work can be found at:
Regulatory_Evol
The website with the results can be found at https://lauren-blake.github.io/Regulatory_Evol/analysis/
rna-seq-diff-exprn
RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code and plots, differential expression (via DESeq and NOISeq), structural variant detection (e.g. fusion genes, via SVDetect) and differential exon usage (via DEXSeq).