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mu (littleblackfish)

littleblackfish

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Company:@recursionpharma

Location:Toronto

Home Page:littleblack.fish

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mu's repositories

i529

Machine learning for Bioinformatics Lab module

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coilmd

MD simulation for a coarse grained DNA model, parallelized by OpenMP

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apis-methylation

DNA methylation in the honey bee and some other Hymenopterans

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apis-model

Discriminative modeling to support cis-regulation of DNA methylation

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FAMES-Taperer-v0

Automation software for the tapering setup at the FAMES lab.

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insole

A pressure-sensitive insole project

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bghandbook

Handbook for Brendel Group students, postdocs, and staff

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BWASP

Bisulfite-seq data Workflow Automation Software and Protocols

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BWASPR

R functions and scripts to process output from the BWASP workflow

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c-di-GMP

Mapping domain co-occurrence networks with emphasis on c-d-GMP binding domains.

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i529-github_fun

Everybody submit pull requests!

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modeCouplingAnalysis.jl

A julia library for mode coupling analysis of protein simulations

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clinicaltrials

Mostly exploratory data analysis on clinicaltrials.gov data

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FastLED

The FastLED library for colored LED animation on Arduino. Please direct questions/requests for help to the FastLED Reddit community: http://fastled.io/r We'd like to use github "issues" just for tracking library bugs / enhancements.

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find-by-SNP

find the best matching individual from population given a vcf file for unknown individual

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fluffy-octo-adventure

test repo

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FMAB

Fundamental Models and Algorithms in Bioinformatics

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gimmemotifs

Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.

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heteroMutationRate

workflow for reproducing results of a nature paper

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keras

Theano-based Deep Learning library (convnets, recurrent neural networks, and more).

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knowledge_linker

Computational Fact Checking from Knowledge Networks

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lammps

lammps with harmonic-cosine potentials and other modifications for breakable bonds

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MechWolf

⚙️🐺 Robotic chemistry made easy

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methylseq

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

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modeCoupledGPCR

a brave endeavor to explore mode-coupling in GPCRs

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rice3k

Workflow for calling variants using data from 3000 Rice Genomes project

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rice3k-legacy

A bunch of stuff I am doing with the 3K rice genomes data (obsolete)

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scripts

generic scripts that I use for analysis, plotting etc.

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