Mike's repositories
bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
beast-mcmc
Bayesian Evolutionary Analysis Sampling Trees
bedtools2
A powerful toolset for genome arithmetic.
bootstrap
The most popular HTML, CSS, and JavaScript framework for developing responsive, mobile first projects on the web.
bwa
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
canto
The Pombase community curation tool
cytoscape.js
Graph theory (a.k.a. network) library for analysis and visualisation (compatible with CommonJS/Node.js/io.js, AMD/Require.js, jQuery, npm, Bower, spm, jspm, Meteor/Atmosphere, and plain JS/JavaScript)
EIG
Eigen tools by Nick Patterson and Alkes Price lab
element
A Vue.js 2.0 UI Toolkit for Web
ExpCube
R analysis of cell/stimulus/expression data
fancytree
Tree plugin for jQuery with support for persistence, keyboard, checkboxes, tables (grid), drag'n'drop, and lazy loading.
FAST
FAST: Fast Analysis of Sequences Toolbox
freebayes
Bayesian haplotype-based polymorphism discovery and genotyping.
htslib
C library for high-throughput sequencing data formats
jquery-treeview
A jQuery Tree plugin
jtg
JavaScript Turtle Graphics
kcharts
基于kissy的图表组件库
mod_rpaf
reverse proxy add forward module for Apache
multiple-select
A jQuery plugin to select multiple elements with checkboxes :)
OrthoFinder
Accurate inference of orthologous gene groups made easy. "OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthologous gene group inference accuracy"
PHPExcel
A pure PHP library for reading and writing spreadsheet files
samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
seqtk
Toolkit for processing sequences in FASTA/Q formats
SO-Ontologies
Collect of SO Ontologies
strategies-wdk
Automatically exported from code.google.com/p/strategies-wdk
webui-popover
A lightWeight popover plugin with jquery ,enchance the popover plugin of bootstrap with some awesome new features
wgsim
Reads simulator