lisphilar / covid19-sir

CovsirPhy: Python library for COVID-19 analysis with phase-dependent SIR-derived ODE models.

https://lisphilar.github.io/covid19-sir/

lisphilar/covid19-sir Issues

[Dev] use type hint and type checker
Updated 3 months ago4
[New] publish new independent package to analyse geo-spacial data
Closed 3 months ago
[Docs] update the last year in citation, 2020-2023 to 2020-2024
Closed 3 months ago
[Bug] FutureWarning: Series.__getitem__ treating keys as positions is deprecated
Closed 3 months ago
[Bug] DeprecationWarning: DataFrameGroupBy.apply operated on the grouping columns
Closed 3 months ago
[Bug] tests failed with covsirphy.util.error.NotIncludedError: 'Population' was not included in the 'column list of raw data'. The dataframe has ISO3, Province, City, Date as columns.
Closed 3 months ago
[New] Add Python 3.12 support
Closed 3 months ago
[Bug] FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '<FloatingArray>
Closed 3 months ago
[New] Drop Python 3.8 support
Closed 3 months ago1
[Bug] FutureWarning: The default of observed=False is deprecated
Closed 8 months ago
[Bug] FutureWarning: Setting an item of incompatible dtype is deprecated
Closed 8 months ago
[Bug] FutureWarning with the behavior of DataFrame concatenation with empty or all-NA entries
Closed 8 months ago
[Bug] FutureWarning: Series.__getitem__ treating keys as positions is deprecated
Closed 8 months ago
[Docs] show data flow diagram of CovsirPhy on README
Closed 9 months ago
[Docs] fix URL expiration regarding pepy.tech
Closed 9 months ago
[Bug] UserWarning when plotting: The figure layout has changed to tight
Closed 10 months ago2
[Bug] Error when the number of Fatal cases are not changing with SIR-D model
Updated 4 months ago10
[Dev] Extending support for City level analysis importing CSV Files
Updated a year ago
[Dev] Update test code per deptry version 0.11.0 release
Closed a year ago
[Data] ValueError when getting vaccination data in Japan
Closed a year ago
[New] (Japan vaccination data) include 4th and 5th
Closed a year ago
[Docs] fix "ValueError: cannot insert City, already exists" when running notebook 01_data_preparation.ipynb
Closed a year ago
[Dev] update version of cancel-workflow-action from 0.10.0 to 0.11.0 to fix warning in workflow
Closed a year ago
[New] DataEngineer().subset() convert categorical variable into dummy/indicator variables
Closed a year ago1
[Bug] error/warning with 'date_parser' argument of `pandas.read_csv()` and Pandas version 2.0.0
Closed a year ago
[Bug] Wrong vaccination data
Closed a year ago5
[Bug] UnExpectedValueRangeError with unexpected value of estimated rho
Closed a year ago3
[Bug] URLError when downloading Japan data with DataDownloader
Closed a year ago1
[Docs] remove warning on README for using covsirphy with Google Colab
Closed a year ago2
[Docs] update the last year in citation, 2020-2022 to 2020-2023
Closed a year ago4
[Docs] fix URL of Monkey Pox data in "Data Preparation"
Closed a year ago
[Dev] use the latest version of deptry (version 0.8.0)
Closed a year ago2
[Bug] DeprecationWarning with choroplethmap
Closed a year ago1
[Bug] URLError when downloading population data with DataDownloader
Closed a year ago3
[Bug] incorrect error handling of ScatterPlot().plot(colormap)
Closed a year ago
[Question] how to set data range with `Dynamics()` and `Dynamics.from_data()`
Closed a year ago2
[Dev] ignore `pytest.PytestDeprecationWarning` in tests
Closed 2 years ago1
[Deprecate] remove `metrics` argument of `Evaluator().score()` because `metrics` exist
Closed 2 years ago1
[Bug] importing covisirphy is slow because importing sklearn when "import covsirphy"
Closed 2 years ago6
[Dev] `make importtime` command to check import time of covsirphy
Closed 2 years ago
[Dev] update data/README.md to document the date ranges of Japan data
Closed 2 years ago
[Docs] APIs of GIS and DataEngineer class not documented
Closed 2 years ago
[Dev] use "main" branch as the default branch
Closed 2 years ago1
[Dev] use branch coverage measurement
Closed 2 years ago
[Dev] stop tests with multiple CPUs to avoid un-necessary FAILED
Closed 2 years ago
[Dev] remove TestClass because one test module has one test class
Closed 2 years ago
[Bug] FutureWarnig with a dependency when prediction
Closed 2 years ago
[Bug] un-necessary shebang and encoding declaration are included in each file
Closed 2 years ago
[Dev] run quality check workflow for all updates of default branch and pull requests
Closed 2 years ago1
[Dev] use Python 3.10 as the main Python version for test
Closed 2 years ago