linxingchen

LinXing Chen's repositories

MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

GPL-3.0000

cobra

A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.

Language:PythonMIT5300

DRAM

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

GPL-3.0000

chainsaw

Rapidly Search and Hunt through Windows Forensic Artefacts

GPL-3.0000

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

MIT000

RoseTTAFold-All-Atom

NOASSERTION000

MGnifyR

R package for searching, downloading and analysis of EBI MGnify metagenomics data

Artistic-2.0000

bioconda-recipes

Conda recipes for the bioconda channel.

MIT000

sphae

NEW!!! Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!

MIT000

astra

pyHMMer-based sequence search and retrieval tool.

000

defense-finder

Systematic search of all known anti-phage systems.

GPL-3.0000

prodigal-gv

A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes

GPL-3.0100

umap

Uniform Manifold Approximation and Projection

BSD-3-Clause000

noveltree

NovelTree is a highly parallelized and computationally efficient phylogenomic workflow that infers gene families, gene family trees, species trees, and gene family evolutionary history.

AGPL-3.0100