Linington Lab

madbyte

Metabolomics And Dereplication By Two-dimensional Experiments - MADByTE NMR Metabolomics Platform

isoanalyst

IsoAnalyst - Analysis of biosynthetically linked stable isotope labeling experiments.

npanalyst

Tool-chain for relating metabolite MS data with bio-activity data. Hosted at www.npanalyst.org

green_tea_ms

Scripts for mass spectrometry peak alignment for green tea metabolomics project

ms_codeutils

A collection of scripts for Python driven MS

npmrd_curator

Backend + Frontend for NP-MRD curation web tools

mvpaShiny_documentation

snapms

core code for the SNAP MS platform for predicting identities of natural products from MS data

article-pipeline-docs

A public repository to host a documentation page for the article_pipeline

lab_database_api

RESTful API for lab database

MultiplexMS_documentation

MultiplexMS GitHub documentation

NPA-Named-Entity-Recognition-Scripts

Repo for NER scripts for NPA Ingestion Database enrichment

sample_git_project

A simple sample git project

apvalidation

The apvalidation python package. Installed via pip (check READme)

html-parser

html parser extracts html tables from Journal of Natural Products. Gathering NMR table types/number of compounds, parsing the rows/columns and separating multiple data types from a single cell.

MS2Analyte_DataVisualization

Data Visualization GUI for MS2Analyte

MultiplexMS

MultiplexMS - Companion tool

mvpa

Multivariate Pattern Analysis (MVPA) R package

mvpaShiny

Multivariate Pattern Analysis (mvpa) R shiny package

relationext

The package for the relation_extraction repo code.

selenium_source

The source code for selenium tests to be run on the deposition site.